Stream temperature records

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Stream temperature records 1 2 Appendix A. Temporal sequence of stream temperature records from the Boise River basin used to parameterize temperature models (n = 78). 2 16 12 8 4 3 4 1993 1994 1995 1996 1997 1998 1999 2 21 22 23 24 25 26

5 6 7 Appendix B. Changes in riparian vegetation determined from Thematic Mapper satellite imagery relative to wildfire perimeters within the Boise River basin between 1989 and 22. TM Classification Fire Cells with Cells with Perimeter 1989 22 Cell count Cell changes vegetation loss vegetation gain Inside Open Open 13636 Open Shrub 962 962 962 (6.2%) Open Tree 4227 4227 4227 (26.5%) Shrub Open 8173 8173 8173 (8.1%) Shrub Shrub 17628 Shrub Tree 2116 2116 2116 (13.3%) Tree Open 71483 71483 71483 (7.6%) Tree Shrub 21558 21558 21558 (21.3%) Tree Tree 43417 Water Water 2125 Total = 31965 117159 (37.7%) 11214 (32.6%) 15945 (5.13%) Outside Open Open 278725 Open Shrub 46585 46585 46585 (37.%) Open Tree 55188 55188 55188 (43.8%) Shrub Open 1478 1478 1478 (13.%) Shrub Shrub 12933 Shrub Tree 243 243 243 (19.3%) Tree Open 4223 4223 4223 (37.3%) Tree Shrub 56176 56176 56176 (49.7%) Tree Tree 363934 Water Water 2742 Total = 15494 23916 (23.8%) 11387 (11.3%) 12673 (12.5%)

8 9 1 Appendix C. An example of riparian vegetation classifications derived from Thematic Mapper satellite imagery before a wildfire in 1989 (a) and after fire in 22 (b). Classifications mapped as vegetative gains and losses (c). 11 12

Radiation (µj/m (Mj/m2/ye 2 /year) 13 14 15 16 17 18 19 2 21 Appendix D. Relationships between radiation, watershed area, and vegetation class used to predict radiation values for the stream network in the BRB. Vegetation classifications were derived from Thematic Mapper imagery and radiation was measured at 181 field sites using hemispherical photography. Because the vegetation classification did not account for variation in vegetative height, density, or species composition within or among individual pixels, considerable variation occurred in the power-law relationships we developed. Despite these omissions, however, the approach did capture predictable distinctions between vegetation types and proved adequate for describing dramatic changes in vegetative structure and radiation inputs that occurred after fires (Appendix C). 1 y = 15x.283 r 2 =.64 8 y = 92.x.283 r 2 =.25 6 y = 71.5x.283 r 2 =.31 4 2 Open Shrub Conifer Open - observed Shrub - observed 22 23 Conifer - observed 1 2 3 4 Watershed contributing area (ha)

Juvenile bull trout (#/1 m 2 ) Rainbow trout (#/1 m2) m 2 ) Juvenile bull trout (#/1 m 2 m ) 2 ) Rainbow trout (#/1 m m2) 2 ) 24 25 26 27 28 29 3 31 32 Appendix E. Stream temperature thresholds used to delineate habitat quality for bull trout (left panels) and rainbow trout (right panels). Thresholds were based on observed densities of bull trout < 15 mm and rainbow trout collected during electrofishing surveys of 249 sites on 2 streams in or near the Boise River basin in 27. Temperatures in several of the warmest sites where bull trout occurred were affected by fires after surveys were complete. Rainbow trout probably occurred in streams warmer than those we sampled, as Dunham et al. (27) observed rainbow trout in Boise River basin sites with MWMTs exceeding 25.5 C and there are several published accounts of rainbow trout in streams as warm as 27 C - 28 C (McCullough et al. 21). 16 12 8 High Quality Suitable 25 2 15 1 High Quality Suitable 4 1 15 2 25 Summer MWMT (C) 5 1 15 2 25 Summer MWMT (C) 2 Juvenile bull trout (#/1 ) m 16 12 8 4 High Quality Suitable 25 2 15 1 5 High Quality Suitable 33 34 7 9 11 13 15 Summer Mean (C) 7 9 11 13 15 Summer mean (C)

Appendix F. Correlations among variables at 78 sites used in stream temperature models for the Boise River basin. Air Air Stream Stream C_A D_D Ele G_V SL V_B Rad MWMT mean Flow mean MWMT C_A 1. D_D.14 1. Ele -.32 -.54 1. G_V -.8 -.23.52 1. SL -.15 -.3.26.13 1. V_B.24.9..24 -.44 1. Rad.33.11 -.3.1 -.4.34 1. Air MWMT -.2.1. -.9 -.8 -.9 -.13 1. Air mean.2.11 -.12 -.9 -.11.2.9.66 1. Flow -.5 -.1.2.21.9.2.18 -.63.2 1. Stream mean.41.33 -.72 -.45 -.25.11.46.12.25 -.16 1. Stream MWMT.29.3 -.6 -.39 -.29.17.46.14.19 -.18.93 1.

2 2 4 4 6 6 8 8 1 1 2 4 6 8 1 2 4 6 8 2 4 6 8 2 4 6 8 2 2 4 4 6 6 8 8 1 1 2 4 6 8 1 2 4 6 8 2 4 6 8 2 4 6 8 2 2 4 4 6 6 8 8 1 1 2 4 6 8 1 2 4 6 8 2 4 6 8 2 4 6 8 1 2 3 4 5 6 7 Appendix G. Semivariograms of the residuals from the final MWMT (left panels) and summer mean (right panels) spatial stream temperature models, which included autocovariance structures based on flow-connected, flow-unconnected, and relationships. Semivariograms quantify the average variability between pairwise combinations of model residuals for a series of spatial lags and plot this variability as a function of the intervening distance. Semivariograms of the temperature models suggested strong spatial trends in residuals based on and flowconnected distances; with weaker trends among flow-unconnected sites. MWMT Mean 1 1 2 2 3 3 4 4 5 5 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 distance (km) 1 1 2 2 3 3 4 4 5 5 1 2 3 4 5 1 2 3 4 5 distance (km) 1 2 3 4 5 1 2 3 4 5 8 9 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 1 2 Distance 3 4 5 (km) distance (km)

1 11 12 13 Appendix H. Percentage of the residual error structures in the final spatial stream temperature models attributable to tail-up, tail-down,, and nugget portions of the covariance structure. The tail-up portion of the covariance structure explained the greatest residual variation, which is generally expected for stream attributes with passive flow characteristics. 1% 8% Tail-up Tail-down Nugget 6% 4% 2% 14 15 % MWMT Mean