P. M. Grewe, C. H. Proctor, K. Evans, J.H. Farley, C. R. Davies, H. E. Irianto, M. S. Adam, A. R. Jauhary, K. Schafer, D. Itano, A.
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1 Marine Research Centre, Maldives Population structure and provenance of tropical tunas: recent results from high throughput genotyping & potential implications for monitoring & assessment P. M. Grewe, C. H. Proctor, K. Evans, J.H. Farley, C. R. Davies, H. E. Irianto, M. S. Adam, A. R. Jauhary, K. Schafer, D. Itano, A. Killian WCPFC August 2016, Bali, Indonesia. OCEANS AND ATMOSPHERE FLAGSHIP Research Institute for Marine Fisheries, Jakarta, Indonesia Research Institute for Tuna Fisheries, Bali, Indonesia
2 Perennial Challenges for Sustainable Fisheries How many fish are being caught? (includes regulated harvest as well as IUU) How many fish are left? (population census, important for modelling long term harvest levels) Agreeing how many can be caught in the future. (e.g. implementation of formal harvest strategies for tuna fisheries) Traceability /chain of custody and provenance (i.e. compliance and informing consumer choice) 2. WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Farley, Killian, Davies
![Also remove D552 from original Panel D. B8b barcode 92[ ]100 D225(80-333 CAGT) 211[ ]567 D203(CAGT (fam)*pic=0.93 D541(317/478)pic=0.](/docs-images/85/91669887/images/3-2.jpg "81 D122(356/476_short) 172[ ]224 98[ ]198 253[ ]391 D517(21/130) 121[ ]477 D573(180/373)pic=0.90 205 [ ]341 D111(64f/177cagt_rpic=0.")
![85 120[ ]208 NOTE: for H 2 panel here the D111[120-208[n=9)] and D573[205(n=5)-341] actually have alleles that overlap so we need to sort out how best to resolve dubious peaks.](/docs-images/85/91669887/images/3-3.jpg "We can make the bins for both loci from 202-212 will be very tight, say.75 bp to give us a lot of? that we will scrutinise manually!")
3 Genetics Solution : Fishery Independent Data ( Low cost, High Throughput, Forensic Grade ) Avoids problems due to changes in fishing effort (i.e. fleet reductions, different methods/gear types) Rjigged Panels Oct-2010.docx (Last printed 13/01/11 4:07 PM) 1 These Are the Current Panels Running for SbtKin_2000 (Jan-2011) PANEL H 2:moved zc11 into Panel-D originals and check how it works in 8hour PCR. Also remove D552 from original Panel D. B8b barcode 92[ ]100 D225( CAGT) 211[ ]567 D203(CAGT (fam)*pic=0.93 D541(317/478)pic=0.81 D122(356/476_short) 172[ ]224 98[ ] [ ]391 D517(21/130) 121[ ]477 D573(180/373)pic= [ ]341 D111(64f/177cagt_rpic= [ ]208 NOTE: for H 2 panel here the D111[ [n=9)] and D573[205(n=5)-341] actually have alleles that overlap so we need to sort out how best to resolve dubious peaks. We can make the bins for both loci from will be very tight, say.75 bp to give us a lot of? that we will scrutinise manually! Same Goes for Panel L 2 with D549 [ (n=1)] and D570[202(n=5)-306] FAM loci. Overcomes bias in data collected by fisheries PANEL L 2: B8b barcode 92[ ]100 D552(4/333)pic=0.92 z3c11a(263/386 (161bp)pic= [ ]238 D570(201/405)pic= [ ]306 D549(25/152)pic=0.82 D524(420/580)pic= [ ] [ ]238 D592a(64/273L37)pic= [ ] [ ]431 When testing see if leaving this out works better. Costs now feasible for high throughput DNA analysis Panel-I 1-1 (new combined ABC plus new loci from Oct-2010) B8b barcode 92[ ]100 D12(pet) * D211 (ned) D10 (ned)* D235 (vic)* D4D6 (fam)* D11b (vic)* 167[ ] [ ]254 3D4(pet)* 212[ ]290 Notice a 177.5bp FAM fragment in each of the I s run 6Jan [ ] [ ] [ ] [ ] Panel-J 1-1 (new combined ABC plus new loci from Oct-2010) B8b barcode 92[ ]100 D201 (pet)* D3 (vic)* B5(fam)** 236[ ] [ ] [ ]411 D582 made bigger &yellow 352[ ]425 D (144)[ ]241(280) D569 green 150 [ ]240 made smaller and WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Farley, Killian, Davies
4 CSIRO - Strategic Program (Fishery Independent Data Based on Genomics) Abundance and fishery monitoring. Stock Structure/Provenance, chain of custody Gene Tagging Species ID Bradford et al., 2016 Marine Freshwater Research 67(8): WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Killian, Farley, Davies
5 CSIRO Program Species ID/Stock Structure/Chain of Custody (Fishery Independent Data Based on Genomics) CSIRO internal funding kick started the development of baseline genetics Australian Centre for International Agricultural Research (ACIAR), (Indonesia, Maldives, Solomon Islands) Marine Stewardship Council (MSC), (Indonesia, Maldives) Australian Department of Foreign Affairs and Trade (DFAT, Australia), (Indonesia, Maldives) Indian Ocean Tuna Commission (IOTC), (Spain, France, Indonesia, Maldives, others.) Australian Government Fisheries Research & Development Council (FRDC) (Evans et al., SA-IP-15 ) CCSBT and ICAAT projects looking at CloseKin/Mark-Recapture & GeneTag 5 WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Killian, Davies
6 Species ID - Stock Structure / Provenace Tackling IUU and Misreporting Modern genetics delivers: Species ID Provenance of fish populations through stock discrimination Individual ID for both product tracking & Gene Tags Discrete pan-pacific yellowfin populations Western Pacific Eastern Pacific Practical application: Truth in labeling Analysis of mixed stock fisheries Identifying IUU catch Catch documentation schemes Also note: SW-IP-02 P.M. Grewe, et al,. Evidence of discrete yellowfin tuna (Thunnus albacares) populations demands rethink of management for this globally important resource. Scientific Reports 5: (2015) 6 WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Killian, Farley, Davies
7 Outcomes & Future Direction of Genetics Close-Kin Abundance Estimate (e.g. Bluefin tunas) Provenance/ mixed fishery analysis (e.g. Yellowfin ) Tuna species ID ( truth in labelling etc ) Targeted applications to identify sources of IUU (improved management and consumer confidence) Key to success - basin scale coverage - global partnerships and collaboration 7. WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Killian, Farley, Davies
8 Tackling Pacific Wide Stock Structure Identify important questions relevant to management needs Good effort put into sampling design, based on current project experience: - targeted and well coordinated sampling strategy - must consider spatial and temporal issues - efficient use of tissue bank samples Effective integration into management requires broad scale genetic coverage Will take time and require collaboration of member countries. Look forward to discussion on global partnerships and future collaborations 8 WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Killian, Farley, Davies
9 Terima kasih - Thank you Peter.Grewe@csiro.au Campbell.Davies@csiro.au CSIRO Oceans and Atmosphere, Hobart, Tasmania, Australia Research Institute for Marine Fisheries, Jakarta, Indonesia Research Institute for Tuna Fisheries, Bali, Indonesia 9 WCPFC, Bali-2016 Grewe, Irianto, Proctor, Adam, Jauhary, Schafer, Itano, Evans, Killian, Farley, Davies
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