Juvenile Salmonid Outmigration Studies in the San Francisco Estuary
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1 Juvenile Salmonid Outmigration Studies in the San Francisco Estuary Allison Bremner¹, Peter LaCivita¹, Bill Brostoff¹, Tom Keegan², Justin Taplin³, Chuck Hanson³, and David Woodbury 4 ¹US Army Corps of Engineers, ²ECorp Consulting Inc. for BPC, ³Hanson Environmental for the Sand Miners, 4 NOAA Fisheries
2 Outline US Army Corps of Engineers Goal and Objectives Background Information Methods Results Analysis Conclusions Bay Planning Coalition: Methods Results Summary Future Allison Bremner Pete LaCivita Tom Keegan Allison Bremner
3 Goal Increase our knowledge of juvenile salmonid migratory behavior to refine the scientific underpinnings of the spatial and temporal dredging work windows.
4 Objectives Determine: transit rates residence times pathways discrete locations of tagged fish during outmigration.
5 Best Available Science
6 Protected by the Endangered Species Act: Late Fall-run Chinook Salmon (Oncorhynchus tshawytscha) Steelhead Trout (Oncorhynchus mykiss) SPECIES OF CONCERN THREATENED
7 Collaboration: LTMS Science Group
8 Collaboration: Bay Planning Coalition Ellen Johnk, Executive Director ECORP Consulting, Inc. was hired to work with the USACE, specifically at: -Port of Oakland -Port of San Francisco -Paradise Cay -Mare Island
9 Collaboration: CALFED-funded group
10 Many contributors = many tagged fish 120 Steelhead 200 Chinook 200 Steelhead 49 Chinook, 49 Steelhead 147 Chinook, 65 Steelhead Total = 396 Chinook, 434 Steelhead
11 Many contributors, many monitor sites Agency Site Location # Monitors, ECorp Petaluma River Golden Gate Bridge SF 10 Buoy 9 Port of S. F. Mare Island Richmond-San Rafael Bridge Paradise Cay Raccoon Strait Alcatraz Disposal Site E. span of the Bay Bridge Port of Oakland
12 Passive acoustic monitoring Manufacturers = Vemco Ltd. Coded ultrasonic tags, V7 and V9 Ultrasonic monitor, VR2, or electronic listening stations
13 Monitor Configuration
14 Monitor Deployment
15 Monitor Arrays
16 Sacramento River CalFed release at Battle Creek USACE release at Rio Vista
17 Fish selection Minimum of 140mm total length (TL) Healthy
18 Transport from the truck to the holding tanks at CABA
19 Putah Creek Facility, UC Davis Outdoor tanks Laboratory
20 Surgery Preparation
21 Surgery procedure- anesethization
22 Surgery procedure, cont procedure, cont.- -measure total length -weigh the fish -record health conditions (scales, fins and eyes) -photograph
23 Surgery procedure, cont.- 10mm incision anterior to the pelvic fins
24 Ta Dah!! The tag is now inserted into the fish.
25 Suturing the incision
26 Suturing the incision, cont.
27 Voila! salmon a la transmitter tag.
28 Release into the Sacramento river at Rio Vista, CA
29 THE FIRST GLANCE: ACOUSTICALLY TAGGED FISH DETECTIONS AT THE RICHMOND SAN RAFAEL BRIDGE PETER LaCIVITA FISHERY BIOLOGIST U.S.ARMY CORPS OF ENGINEERS SAN FRANCISCO DISTRICT LTMS SCIENCE SYMPOSIUM JUNE 22, 2007 OAKLAND, CALIFORNIA
30 COE TAGGED FISH DETECTED AT THE RICHMOND SAN RAFAEL BRIDGE DETECTIONS BY RELEASE DATE AND SPECIES CHINOOK STEELHEAD DATE RELEASE DETECT % RELEASE DETECT % 1/ / / / / TOTALS
31 TAGGED FISH DETECTIONS WEST SPAN RICHMOND SAN RAFAEL BRIDGE KS SL = SHIP CHANNEL A B C D E F G H I J KS SL M COE CHINOOK COE STEELHEAD ALL OTHER
32 30 TAGGED FISH DETECTIONS EAST SPAN RICHMOND SAN RAFAEL BRIDGE KS SL=SHIP CHANNEL I J KS SL M N O P Q R S T U COE CHINOOK COE STEELHEAD ALL OTHER
33 TOTAL FISH TAGS DETECTED RICHMOND SAN RAFAEL BRIDGE KS SL = SHIP CHANNEL A B C D E F G H I J KS SL M N O P Q R S T U TOTAL ALLSPECIES
34 DEPTH IN FEET AT THE SAN RAFAEL BRIDGE STATIONS A B C D E F G H I J K L M N O P Q R S T U DEPTH IN FEET
35 TOTAL OF ALL ACOUSTIC SIGNALS DETECTED AT THE RICHMOND SAN RAFAEL BRIDGE A B C D E F G H I J K L M N O P Q R S T U TOTAL DETECTIONS
36 SUMMARY WE CAN TAG AND RELEASE FISH WE CAN DETECT THEIR PASSAGE AT THE RS BRIDGE: DETECT TIMES SHOW ~ 99% COVERAGE ALL SPECIES TEND TO USE DEEPER WATER RESIDENCE TIME VARIABLE
37 THE SPAGHETTI DIAGRAM
38 THAT S ALL FOLKS!
39 San Francisco Bay Juvenile Salmonid Tagging Project: Bay Planning Coalition Overview Presented to LTMS Science Symposium June 22, 2007 Presented by Thomas Keegan, ECORP Consulting, Inc. Principal Investigator for Bay Planning Coalition
40 BPC Receiver Deployment 25 receivers installed by BPC/ECORP 5 Port of Oakland 9 East Span Bay Bridge 5 Port of San Francisco 2 Mare Island 1 Paradise Cay 3 Port of Stockton
41 BPC/ECORP s Receiver Deployment Schedule 80 PVC deployment bracket Attached to pier pilings with large SS hose clamps Safety ropes through PVC and tied to pier pilings Study identification placard
42 Receiver Deployment Bracket
43 Mare Island Receiver Locations Pier 22 & 23
44 SF Bay Receiver Locations East Span Bay Bridge 9 receivers Port of SF Piers 45, 35, 27, 30-32, and 80 Port of Oakland 5 receivers
45 Paradise Cay Receiver Location Paradise Cay North Dock
46 Port of Stockton Receiver Locations 3 receivers
47 Preliminary BPC Project Results BPC/ECORP has detected 100 unique tag ID s; including steelhead, Chinook salmon, striped bass, and green sturgeon, spread over 25 receivers Tags have been detected from all agencies involved in study
48 Receiver Locations
49 Chinook Salmon #1977 Transit Time 9 days
50 Chinook Salmon #2043 Transit Time 27 days
51 Steelhead #2004 Transit Time 16 days
52 Steelhead #2014 Transit Time 23 days
53 Steelhead #2019
54 Steelhead #2021
55 Steelhead #2037 Transit Time 27 days
56 Bay Planning Coalition Member Interests Contribute to the collection of sound, scientifically based information NOAA/NMFS is a study participant and has indicated that fish distribution data are necessary for our understanding of how these fish species use the bay Enable NOAA/NMFS, and other regulatory agencies to make well-informed decisions regarding potential impacts that proposed dredging activities and other marine construction activities, may or may not have on special-status species and habitats
57 Summary A successful collaboration Monitors and tags performed to expectation Fish survival: post surgery 100% post release 98% beyond R-S Bridge ~30% beyond GG Bridge ~23% Data analysis: at Spaghetti Diagram stage further analysis dependent on final data collection Interim data use:??? More tagged fish go around SF10 than through???
58 Future Success adequate to warrant continuing with planned 3- year study Minor modifications will be made to enhance monitor deployment and retrieval Monitors will be placed at other locations of interest Green Sturgeon?
59 Acknowledgements BPC: Ellen Johnk NOAA Fisheries: Dr. Bruce MacFarlane, Arnold Ammann, Cyril Michel, Steve Lindley, UC Davis: Dr. Pete Klimley, Phil Sandstrom, Eric Chapman, Eric Hallen, Paul Lutes BCDC: Brenda Goeden, Jessica Hamburger USACE: Susan Ma, Mike Dillabough, Cynthia Jo Fowler, Fari Tabatabai, Al Paniccia, Hillary Wolfe, Capt. Bill Brazil, Hank Macner, crew of the Grizzly LTMS Science Groupies, esp. Rob Lawrence, Phil Lebednik, Jason Richards, Jody Zaitlin, Melissa Escaron Vemco, ltd., USFWS: Pat Brandes, staff at the Coleman National Fish Hatchery EBMUD
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