Activity Report: Plankton Group from 2006 to the present
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1 Japan Society for the Promotion of Science Multilateral Cooperative Research Program: Coastal Marine Science National Coordinators Meeting, Melaka, Malaysia May 2008 Project 3: Biodiversity in the Coastal Waters of Southeast and East Asia Activity Report: Plankton Group from 2006 to the present Shuhei Nishida Ocean Research Institute University of Tokyo
2 Proposed topics and achievement with our self-evaluation 1) Training course on methods of zooplankton ecology and identification 2) Manual for methods of zooplankton ecology and taxonomy with identification keys to higher taxa and species of selected groups 3) Species lists of copepods, mysids, chaetognaths, tunicates, and cnidarians 4) General field survey at selected sites on species diversity and community structure of zooplankton 5) Plankton watch: An extensive geographic survey on deformities, intersexualities, and parasitism in copepod- and mysid populations as an indicator of human impact (collaborative with Pollution Sub-project) 6) Trophic-structure diversity of coral-reef and mangrove communities: A comparative study (collaborative with other Biodiversity Groups) 7) Biodiversity of plankton communities in the Sulu and Celebes Seas (collaborative with Hakuho-Maru Cruise)
3 Training Course on Methods of Zooplankton Ecology and Identification Lectures (2 days) What is plankton? A general introduction Methodology of zooplankton ecology Introductions to Crustacea, gelatinous plankton, other animal groups Practices (4 days, including field sampling) Sample processing and primary sorting Identification of major taxonomic groups: Copepoda, Chaetognatha, Mysidacea, Cnidaria, Tunicata, Demersal plankton 2006 (Nov ): Univresiti Putra Malaysia, Malaysia 2007 (Oct ): Research Institute for Biology, Indonesia 2008 (Oct.): Advanced course, Universiti Ke bangsaan Malaysia
4 Dr. Sawamoto s lecture on sampling methods Training Course in Indonesia, 2007
5 Plankton sampling off Port Dickson Training Course in Malaysia, 2006
6 Dr. Ohtsuka demonstrating copepod dissection Training Course in Indonesia, 2007
7 Discovery of New Species (January 2006-May 2008) A total of 12 scientific papers describing: 1 new genus and 14 new species Mysids: 4 new species Copepods: 1 new genus, 7 new species Amphipods: 2 new species Leptostraca (Nebalia): 1 new species Description of >> 10 species in progress
8 Publications (January 2006-May 2008) > 40 scientific papers Description of new taxa: 12 papers Other taxonomic papers: 4 papers (new records, re-description, regional fauna) Distributional ecology, community, behavior: 22 papers Production and trophic ecology: 4 papers Molecular genetics: 1 paper Pollution, toxicology: 1 paper
9 Results from deep, marginal seas Biogeochemistry and Biodiversity in the Sulu Sea Nishida & Gamo (eds.) papers 1 summary 1 physics 3 geochemistry 4 plankton 2 benthos
10 CMarZ Goals and Approaches: analyze zooplankton species diversity, biomass, biogeography, and genetic diversity by 2010, focusing on the ~7,000 described species of holozooplankton DNA barcodes for identified zooplankton species new sampling technologies and new analytical tools database with species-level, specimen-based, georeferenced entries; integrated with OBIS education, professional training, and capacity-building in zooplankton taxonomy
11 Zooplankton Barcoding A neighbour-joining tree of calanoid copepods based on mitochondial COI gene sequence Clausocalanoidea Scolecitrichidea Centropagoidea Megacalanoidea Eucalanoidea Arietelloidea
12 Phylum Results to Date DNA Barcodes for Zooplankton Taxon (Class or Order) Species Described Barcod e Gene No. Species (GenBank) No. Species Source of Information Foraminifera Foraminifera 49 18S rrna C. devargas Actinopoda Acantharea S rrna 14 GenBank Polycystinea (Radiolaria) S rrna 27 GenBank Cercozoa Phaeodarea (Radiolaria) S rrna 3 GenBank Ciliophora Aloricate Ciliata 150 Tintinnida S RNA 52 B. Costas Cnidaria Hydromedusae 842 COI 5 25 GenBank Siphonophora 160 COI GenBank, S. Haddock, B. Ortman Cubomedusae 18 0 GenBank Scyphomedusae 161 COI GenBank, B. Ortman, others Ctenophora Ctenophora 90 ITS GenBank, B. Ortman Rotifera Rotifera 50??? Platyhelminthes Platyhelminthes 3? COI 1 20 GenBank, M. Liviatis Nematomorpha Nectonema 5 18S? Nemertea Nemertinea 99 COI 1 3 GenBank, R. Jennings Annelida Polychaeta 110 COI 5 4 GenBank, R. Jennings Mollusca Gastropoda 144 COI GenBank, R. Jennings Cephalopoda 370 COI 86 5 GenBank, R. Jennings Arthropoda Cladocera 8 COI Ostracoda 169 COI 0 35 A. Bucklin Isopoda 20 COI 0 14 S. Brix Copepoda 2000 COI A. Bucklin, R. Machida, others Mysidacea 700 COI 4 GenBank Amphipoda 400 COI GenBank Euphausiacea 86 COI A. Bucklin, S. Jarman Decapoda 50 COI GenBank, K. Crandall Insecta 5 COI 5 R. Jennings Chaetognatha Chaetognatha 93 COI, COII A. Pierrot-Bults, R. Machida, R. Jennings Chordata Appendicularia 64 COI 1 10 L. Madin, A. Bucklin, GenBank Pyrosoma 8 18S rrna 1 GenBank, Wada Doliolida 17 COI 1 GenBank, Wada Salpidae 45 COI 0 5 L. Madin, A. Bucklin TOTALS 7,
13 2. Zooplankton community structure Long term research (LTR) Long term observation of zooplankton carried out in the Straits of Malacca since May 2002 onwards. Observation will continue to obtain decadal samples. Straits of Malacca Peninsular Malaysia South China Sea 6 4 Stn. P 2
14 2. Zooplankton community structure Abundance (inds. m -3 ) SW NE SW NE May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Seasonal variation of zooplankton community
15 2. Zooplankton community structure SW SW NE SW SW SW SW NE SW SW Inter Inter NE Inter SW NE NE NE NE Inter NE NE NE NE Dissimilarity index Zooplankton community: SW and NE groups
16 Jellyfish fisheries in the north of Vietnam To know Target species Fishing gear Processing method Economic and Ecological aspects PI: Nguyen Thi Thu (IMER) Funded by: Vietnam Academy of Science and Technology (VAST) Years: JSPS collaborator: Jun Nishikawa
17 A new bilateral research project Biodiversity and Ecological Roles of Medusae and Ctenophores in Indonesian Waters LIPI-JSPS S. Ohtsuka and Mulyadi (Co-PIs) R. Machida, J, Nishikawa, S. Nishida, J. Hiromi, D.J. Lindsay, Y. Miyake and 3 Indonesian Scientists
18 Top page CMarZ-Asia Database: (
19 List of selected samples Sampling metadata
20 Species search Species database Species name Distribution Photographic image Taxonomic illustration Sample details DNA sequence database & link to blast search
21 Time Schedule: Years Identification manual MS preparation Publication Training course Field sampling (Trophic structure) Malaysia Coral reef/mangrove/ estuaries Indonesia Malaysia: advanced course + field research Pollution study Preliminary survey Sampling and analysis CMarZ-Asia Database
22 Thank you JSPS ー Plankton Group Indonesia: Mulyadi, Inneke FM Rumengan Malaysia: Fatimah MD Yusoff, Othman BH Ross Philippine: Lourdes V. Castillo, Wilfredo L. Campos Thailand: Ajcharaporn Piumsomboon Vietnam: Nguyen Thi Thu, Nguyen Cho Japan: S. Sawamoto, H. Sekiguchi, J. Nishikawa T. Kikuchi, N. Iwasaki, T. Toda, S. Ohtsuka Census of Marine Zooplankton (CMarZ) A. Bucklin (Univ. Connecticut) R. Machida (Univ. Tokyo) D. Lindsay (JAMSTEC)
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